2023
November 23, 2023, The outcome of the mapping exercise that was conducted by NRLs within the FWD AMR-RefLabCap
October 23-27 2023, 2nd Multidisciplinary training workshop for public health microbiologists and epidemiologists
Programme:
- Agenda (pdf)
Presentations: October 23 (Day 1)
- Welcome and Introduction (pdf)
- Epidemiological investigation on foodborne outbreaks in Denmark (pdf)
- WGS-based subtyping methods and nomenclature (pdf)
- Cluster detection and interpretation using cgMLST and SNP analysis (pdf)
- Integration of AMR into surveillance and outbreak investigation (pdf)
- Introduction to exercises: Tabletop exercises combined with WGS cluster and AMR profile analysis on provided data (pdf)
Presentations: October 27 (Day 5)
- Wrap-up of the exercises/group work (pdf)
- One Health status on Campylobacter in Denmark (pdf)
- EU level surveillance using EpiPulse molecular typing tool (pdf)
- Next workshop (pdf)
Additional materials:
Danish Questionnaire Salmonella (pdf)
Danish Questionnaire Campylobacter (pdf)
April 26-27 2023, 2nd Network meeting at Statens Serum Institut, Copenhagen, Denmark
Programme:
Presentations:
Session 1: Project overview
- Welcome – meet and greet/Project activities, overview of first 2 years, Eva Møller Nielsen, SSI, Denmark (pdf)
- Evaluation of project activities, Egle Kudirkiene, SSI, Denmark (pdf)
- EQA1-WGS-AMR and RingTrial1-WGS-AMR, Malgorzata Ligowska-Marzeta, SSI, Denmark (pdf)
Session 2: Update from DG Sante and ECDC
- Update from DG SANTE, Julia Langer, DG SANTE
- ECDC strategy on using WGS for AMR surveillance, Cecilia Jernberg, ECDC (pdf)
- Reporting of WGS data for AMR – how to do it, analyses, outputs in EpiPulse, Therese Westrell and Erik Alm, ECDC (pdf)
- EQA8-AST, Jeppe Boel, SSI (pdf)
Session 3: Exchange of experience
- The Establishment of the Irish Campylobacter Reference Laboratory Service and Results from 2022 Annual Data, Tee Keat Teoh, Ireland (pdf)
- Implementing WGS-based surveillance of Salmonella and Campylobacter in Finland, Marianne Gunell, Finland (pdf)
- WGS and bioinformatics workflow for Campylobacter sp. surveillance in France, Quentin Jehanne, France (pdf)
- The implementation of ISO accredited bioinformatic pipelines for AMR detection and how to report? Maaike van den Beld, The Netherlands (pdf)
Session 5: National capacity building
- Model protocol & Overview of priority countries work, Egle Kudirkiene, SSI, Denmark (pdf)
- First experience of using NGS for Salmonella characterization in Latvia during FWD AMR-ReflabCap project, Oksana Savicka, Latvia (pdf)
- Introducing WGS for Salmonella and Campylobacter at Mater Dei Hospital, Malta, Rodianne Abela, Malta (pdf)
- Priority panel discussio EDDC (pdf)
Session 6: Cross-sector collaboration
- EURL-Campylobacter: Whole genome sequencing and cluster analysis of Campylobacter, Ásgeir Ástvaldsson, SVA (pdf)
- EURL-STEC: ARIES platform and Inter EURLs Working Group on NGS, Federica Gigliucci, ISS (pdf)
- Experience on cross-sector collaboration, Denmark, Susanne Schjørring, SSI, Denmark (pdf)
- Outbreak caused by CPO in medicine, Henrik Hasman, SSI, Denmark (pdf)